Background Materials

Click on the images below to access each resource.

Download R before class.

Download Sublime before class.

Familiarize yourself with R using this intro tutorial.

Optional background reading.

Day 1

Day 1 Lecture 1a slides

Day 1 Lecture 1b slides.

Day 1 R exercise. Simple deterministic SIR model.

Day 1-2 exercise PDF, parameter estimation

Day 1-2 exercise, parameter estimation R code

Day 1-2 data

Lecture 2

Day 2 R exercise, stochastic simulations.

Day 2 R code, stochastic simulations.

Day 3 Lecture

Day 3 R code, structured models

Day 3 R code for structured models

Please complete the online evaluation available by logging into your Summer Institutes account. After you complete the evaluation, you will be able to download the Certificate of Completion through the account.